Tuesday, June 23, 2020

Did lockdowns really save 3 million COVID-19 deaths, as Flaxman et al. claim?

By Nic Lewis. Excerpts:

"Key points about the recent Nature paper by Flaxman and other Imperial College modellers


1) The transition from rising to declining recorded COVID-19 deaths in the in 11 European countries that they studied imply that transmission of COVID-19 must have reduced substantially.
The study was bound to find that together the five government non-pharmaceutical interventions (NPI) they considered contributed essentially 100% of the reduction in COVID-19 transmission, since in their model there is nothing else that could cause it.

2) The prior distribution they used for the effects of NPIs on transmission in their subjective Bayesian statistical method hugely favours finding that almost all the reduction in transmission is due to one, or possibly two, NPIs with all the others having a negligible effect.

The probability density of the prior distribution at their median estimates of the effect on transmission of each type of NPI, which allocate essentially all the reduction in transmission to lockdowns, was many billion times greater than it would have been if the same total estimated reduction had been spread evenly across the types of NPI.

3) Which intervention(s) is/are found to be important depends critically on the assumptions regarding the delay from infection to death. When using their probabilistic assumptions regarding the delay from infection to death, a huge (and highly improbable given other assumptions they made) country-specific effect is required to explain the reduction in transmission in Sweden, where no lockdown occurred. If delays from infection to death are increased by just three days, their model no longer finds lockdowns to have the largest effect, and a more moderate country-specific effect is required to explain the reduction in transmission in Sweden.

4)The estimated relative strengths of different NPIs are also considerably affected by the use of an alternative prior distribution for their effects on transmission that does not strongly bias the estimation of most of them towards a negligible level. They are also considerably affected by phasing in over a few days the effects of the two NPIs that seem unlikely to have had their full effect on their date of implementation.

5) It follows from the above that that study provides no information whatsoever as to the actual contribution from all NPI combined to the reduction in transmission, and nor does it provide robust estimates of relative effects of different NPI."

Conclusions

First and foremost, the failure of Flaxman et al.’s model to consider other possible causes apart from NPI of the large reductions in COVID-19 transmission that have occurred makes it conclusions as to the overall effect of NPI unscientific and unsupportable. That is because the model is bound to find that NPI together account for the entire reduction in transmission that has evidently occurred.

Secondly, their finding that almost all the large reductions in transmission that the model infers occurred were due to lockdowns, with other interventions having almost no effect, has been shown to be unsupportable, for two reasons:
  • the prior distribution that they used for the strength of NPI effects is hugely biased towards finding that most interventions had essentially zero effect on transmission, with almost the entire reduction being caused by just one or two NPI.
  • the relative strength of different interventions inferred by the model is extremely sensitive to the assumptions made regarding the average delay from infection to death, and to a lesser extent to whether self isolation and social distancing are taken to exert their full strength immediately upon implementation or are phased in over a few days.
It seems likely that the inferred relative strengths of the various NPIs are also highly sensitive to other assumptions made by Flaxman et al., and to structural features of their model. For instance, their assumption that the effect of different interventions on transmission is multiplicative rather than additive will have affected the estimated relative strengths of different types of NPI, maybe substantially so. The basic problem is that simply knowing the dates of implementation of the various NPI in each country does not provide sufficient information to enable robust estimation of their relative effects on transmission, given the many sources of uncertainty and the differences in multiple regards between the various countries."

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